2017-dibsi-metagenomics
1.0
Site
2017 DIBSI Metagenomics Workshop at UC Davis
Welcome!
Booting a Jetstream Computer Instance for your use!
Intro to Shell Lesson
The Shell
For Future Reference
Finding files
Running command-line BLAST
Short read quality and trimming
Run the MEGAHIT assembler
Annotation with Prokka
A sourmash tutorial
K-mers, k-mer specificity, and comparing samples with k-mer Jaccard distance.
Binning a Metagenomic Assembly
Gene Abundance Estimation with Salmon
Mapping
Slicing and dicing with k-mers
Using Anvi’o to Knit Everything Together
Using and Installing Circos
Workflow and repeatability discussion
Data
Building this site on your own
2017 / July / Environmental Metagenomics
Day 2 - installation instructions
K-mer Spectral Error Trimming
Page
What’s next?
Source
What’s next?
¶
CAzy, KEGG
So you’ve got a lot of data...
How do I know what programs to use?
LICENSE:
This documentation and all textual/graphic site content is released under
Creative Commons - 0 (CC0)
--
fork @ github
.