FastQCFastQC Report
Sat 22 Apr 2017
SRR1976948_2.qc.fq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SRR1976948_2.qc.fq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 885734
Filtered Sequences 0
Sequence length 25-251
%GC 45

[FAIL] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[FAIL] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
GGGGG 969175 7.0998063 23.53317 240-247
CCCCC 636780 4.858185 11.976006 240-247
TTTTT 1207440 3.7843487 4.55828 8
AAAAA 1203730 3.7490988 4.52956 1
CGGGG 445125 3.2874136 8.125327 240-247
CCGGG 422355 3.1446915 6.4918547 240-247
CCCGG 401700 3.0152986 5.631115 240-247
GGCGG 391565 2.891853 5.644223 240-247
GGGGC 376095 2.7776012 6.6182013 240-247
CCCCG 353915 2.6782773 5.4263625 240-247
GCCCC 317805 2.4050121 5.037329 240-247
GCGGG 306615 2.2644656 5.1053047 240-247