FastQCFastQC Report
Sat 22 Apr 2017
SRR1976948_1.qc.fq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename SRR1976948_1.qc.fq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 885734
Filtered Sequences 0
Sequence length 27-251
%GC 44

[WARN] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[WARN] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 1307280 3.6098318 5.0359607 220-229
TTTTT 1118015 3.160437 4.0629826 8