Basic Statistics
Measure | Value |
---|---|
Filename | SRR1976948_2.qc.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 885734 |
Filtered Sequences | 0 |
Sequence length | 25-251 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Kmer Content
Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGG | 969175 | 7.0998063 | 23.53317 | 240-247 |
CCCCC | 636780 | 4.858185 | 11.976006 | 240-247 |
TTTTT | 1207440 | 3.7843487 | 4.55828 | 8 |
AAAAA | 1203730 | 3.7490988 | 4.52956 | 1 |
CGGGG | 445125 | 3.2874136 | 8.125327 | 240-247 |
CCGGG | 422355 | 3.1446915 | 6.4918547 | 240-247 |
CCCGG | 401700 | 3.0152986 | 5.631115 | 240-247 |
GGCGG | 391565 | 2.891853 | 5.644223 | 240-247 |
GGGGC | 376095 | 2.7776012 | 6.6182013 | 240-247 |
CCCCG | 353915 | 2.6782773 | 5.4263625 | 240-247 |
GCCCC | 317805 | 2.4050121 | 5.037329 | 240-247 |
GCGGG | 306615 | 2.2644656 | 5.1053047 | 240-247 |